Kieran Sharkey

Please contact me if you require reprints of any of the following articles

 

Metelmann, Pattni, Brierley, Cavalerie, Caminade, Blagrove, Turner, Sharkey, Baylis: Impact of climatic, demographic and disease control factors on the transmission of COVID-19 in large cities worldwide. (2020) medRxiv

Wardah, Blagrove, Sharkey, Baylis: Divide and conquer: machine-learning integrates mammalian, viral, and network traits to predict unknown virus-mammal associations. (2020) BioRxiv

Wardeh, Sharkey, Baylis: Integration of shared-pathogen networks and machine learning reveals the key aspects of zoonoses and predicts mammalian reservoirs. Proc. R. Soc. B 287, 20192882 (2020)

Jones, Munro, Green, Morgan, Murray, Norman, Ryder, Salama, Taylor, Thrush, Wallace, Sharkey: The contact structure of Great Britain’s salmon and trout aquaculture industry. Epidemics 28, 100342 (2019)

Overton, Broom, Hadjichrysanthou, Sharkey: Methods for approximating stochastic evolutionary dynamics on graphs. J. Theor. Biol. 468, 45-59 (2019)

Sharkey: Localization of eigenvector centrality in networks with a cut vertex. Phys. Rev. E (99)  012315 (2019) arXiv

Leedale, Sharkey, Colley, Norton, Peeney, Mason, Sathish, Murdoch, Sharma, Webb: A combined in vitro/in silico approach to identifying off-target receptor toxicity. iScience (4) 84-96 (2018)

Wilkinson, Sharkey: The impact of the infectious period on epidemics. Phys. Rev. E (97) 052403 (2018) arXiv

Sharkey: A control analysis perspective on Katz centrality. Sci. Rep. (7) 17247(2017) arXiv

Wilkinson, Ball, Sharkey: The relationships between message passing, pairwise, Kermack-McKendrick and stochastic SIR epidemic models. J. Math. Biol. (75) 1563-1590 (2017) arXiv

Jonkers, Sharkey: The differential warming response of Britain’s rivers (1982-2011). Plos ONE (11) e0166247 (2016). Water temperature time series.

Wilkinson, Ball, Sharkey: The deterministic Kermack-McKendrick model bounds the general stochastic epidemic. J. Appl. Probab. (53) 1031-1040 (2016) arXiv

Frasca, Sharkey: Discrete-time moment closure models for epidemic spreading in populations of interacting individuals. J. Theor. Biol. (399) 13-21 (2016)

Ball, Wilkinson, Sharkey: Erratum: Message passing and moment closure for susceptible-infected-recovered epidemics on finite networks [Phys. Rev. E89, 022808 (2014)]. Phys. Rev. E92, 039904 (2015)

Sharkey, Wilkinson: Complete hierarchies of SIR models on arbitrary networks with exact and approximate moment closure. Math Biosci (264) 74-85 (2015) arXiv

Hadjichrysanthou, Sharkey: Epidemic Control Analysis: designing targeted intervention strategies against epidemics propagated on contact networks. J. Theor. Biol. (365) 84-95 (2015)

Wilkinson, Sharkey: Message passing and moment closure for susceptible-infected-recovered epidemics on finite networks Phys Rev E89, 022808 (2014) arXiv

Bagnall, Leedale, Taylor, Spiller, White, Sharkey, Bearon, See: Tight control of Hypoxia Inducible Factor (HIF)-alpha transient dynamics is essential for cell survival in hypoxia J. Biol. Chem. (289) 5549-5564 (2014)

Sharkey, Kiss, Wilkinson, Simon: Exact equations for SIR epidemics on tree graphs Bull. Math. Biol. (2013) arXiv

Kotze, Armitage, Sharkey, Allwood, Dunn, Williams, Goodacre: A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions BMC Syst. Biol. 7:107 (2013)

Wilkinson, Sharkey: An exact relationship between invasion probability and endemic prevalence for Markovian SIS dynamics on networks  PloS ONE (8) e69028 (2013) arXiv   Supplementary data

Sharkey: Deterministic epidemic models on contact networks: correlations and unbiological terms Theor. Popul. Biol. (79) 115-129 (2011) Preprint, Supplementary material

Jonkers, Sharkey, Thrush, Turnbull, Morgan: Epidemics and control strategies for diseases of farmed salmonids: A parameter study Epidemics (2) 195-206 (2010) Preprint, Supplementary material

Jonkers, Sharkey, Christley: Preventable H5N1 avian influenza epidemics in the British poultry industry network exhibit characteristic scales J. R. Soc. Interface (7) 695-701 (2010)

Albers, Birkeland, Driessen, Gertig, Haferkamp, Klenk, Kouril, Manica, Pham, Ruoff, Schleper, Schomburg, Sharkey, Siebers, Sierocinski, Steuer, van der Oost, Westerhoff, Wieloch, Wright, Zaparty: SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation Biochem. Soc. Trans. (37) 58-64 (2009)

Sharkey: Deterministic epidemiological models at the individual level J. Math. Biol.(57) 311-331 (2008) Preprint

Sharkey, Bowers, Morgan, Robinson, Christley: Epidemiological consequences of an incursion of highly pathogenic H5N1 avian influenza into the British poultry flock Proc. R. Soc. B (275) 19-28 (2008)

Sharkey, Fernandez, Morgan, Peeler, Thrush, Turnbull, Bowers: Pair-level approximations to the spatio-temporal dynamics of epidemics on asymmetric contact networks J. Math. Biol. (53) 61-85 (2006) Preprint

McNeile, Michael, Sharkey: Flavor singlet mesons in QCD Phys Rev D (65) Art. No. 014508 (2002)

Allton, Booth, Bowler, Garden, Hart, Hepburn, Irving, Joo, Kenway, Maynard, McNeile, Michael, Pickles, Sexton, Sharkey, Sroczynski, Talevi, Teper, Wittig: Effects of nonperturbatively improved dynamical fermions in QCD at fixed lattice spacing Phys Rev D (65) Art. No. 054502 (2002)

Irving, McNeile, Michael, Sharkey, Wittig: Is the up-quark massless? Phys Lett B (518) 243-251 (2001)

Boucaud, Burgio, Di Renzo, Leroy, Micheli, Parrinello, Pene, Pittori, Rodriguez-Quintero, Roiesnel, Sharkey: Lattice calculation of 1/p(2) corrections to alpha(s) and of Lambda(QCD) in the (MOM)over-tilde scheme. J. High Energy Physics (4) 006 (2000)

Publications