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Image SXM
Brings all the slices of a stack into registry with the current slice. This is done using cross-correlation of the slices: (i) the largest-possible FFT is taken of the current (reference) slice, (ii) for each of the other slices the FFT is taken and multiplied by the FFT of the reference slice, (iii) an inverse FFT of this product is the cross-correlation of the images, the maximum intensity of which gives the relative shift between the two images, (iv) this shift is applied to the slice to bring it into registry with the reference slice. If a power-of-two-sized square region of interest (ROI) is selected before calling this procedure, then this will be used rather than the largest possible square ROI. The shift applied to each slice is displayed in the Session Log.



Steve Barrett     November 2014


S.D.Barrett @ liv.ac.uk