Dr Antony McCabe
Senior Researcher in Bionformatics Software
University Teacher in Computer Science
Email: a.mccabe@liverpool.ac.uk
Tel: +44 151 795 4555
Affiliations
I am a Senior Researcher in Bionformatics Software in the Computational Biology Facility.I am also teaching in the Department of Computer Science,particularly when this relates to Bioinformatics software.
Research Interests
I am currently working on a number of different bioinformatic research projects, including developing high-performance software, data analytics, and machine learning.I am working on applying Deep-Learning approaches to the automated analysis of Paediatric Brain Tumours.
My past work includes the Allele Frequencies Net Database, the ChannelBank prototype as well as in-house software for research purposes and data visualisation.
Example Video
Publications
2021
- McCabe A, Jones AR,
lcmsWorld: High-Performance 3D Visualization Software for Mass Spectrometry
, Journal of Proteome Research , 2021. - Oyarzun P, Kashyap M, Fica V, Salas-Burgos A, Gonzalez-Galarza FF, McCabe A, Jones AR, Middleton D, Kobe B,
A Proteome-Wide Immunoinformatics Tool to Accelerate T-Cell Epitope Discovery and Vaccine Design in the Context of Emerging Infectious Diseases: An Ethnicity-Oriented Approach
, FRONTIERS IN IMMUNOLOGY , 2021. - Gonzalez-Galarza FF, McCabe A, dos Santos EJM, Jones AR, Middleton D,
A snapshot of human leukocyte antigen (HLA) diversity using data from the Allele Frequency Net Database
, HUMAN IMMUNOLOGY , 2021.
2020
- McCabe A, Gonzalez-Galarza FF, Santos EJMD, Jones J, Takeshita L, Ortega-Rivera ND, Cid-Pavon GMD, Ramsbottom K, Ghattaoraya G, Alfirevic A et al,
Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
, Nucleic Acids Research, 2020.
2018
- Gonzalez-Galarza FF, McCabe A, Melo Dos Santos EJ, Takeshita L, Ghattaoraya G, Jones AR, Middleton D,
Allele Frequency Net Database.
, HLA Typing, Book Chapter, 2018.
2017
- Peffers M, Jones AR, McCabe A, Anderson J,
Neopeptide Analyser: A software tool for neopeptide discovery in proteomics data.
, Wellcome open research, 2017.
- Sanchez-Mazas A, Nunes JM, Middleton D, Sauter J, Buhler S, McCabe A, Hofmann J, Baier DM, Schmidt AH, Nicoloso G et al,
Common and well-documented HLA alleles over all of Europe and within European sub-regions: A catalogue from the European Federation for Immunogenetics
, HLA 89(2), 2017.
2016
- Ghattaoraya GS, Dundar Y, Gonzalez-Galarza FF, Maia MHT, Santos EJM, da Silva ALS, McCabe A, Middleton D, Alfirevic A, Dickson R et al,
A web resource for mining HLA associations with adverse drug reactions: HLA-ADR.
, Database : the journal of biological databases and curation, 2016.
2015
- McCabe A, Melos dos Santos EJ, Gonzalez-Galarza FF, Jones AR, Middleton D,
Allele Frequencies Net Database: Improvements for storage of individual genotypes and analysis of existing data
, HUMAN IMMUNOLOGY 77(3), 2015.
2013
- P.W Goldberg and A. McCabe,
Shortest Paths with Bundles and Non-Additive Weights is Hard
, Procs of the 7th International Conference on Algorithms and Complexity, 2013.